Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| UCEC | rs12207059 | chr6:25922385 | C/T | 3.12E-5 | 167 | 21.85 | 25.87 | 13.93 | KM Plot |
| UCEC | rs12214669 | chr6:33556605 | C/G | 2.47E-7 | 174 | 13.82 | 24.63 | 21.1 | KM Plot |
| UCEC | rs12279819 | chr11:62137245 | G/A | 1.12E-11 | 173 | 22.6 | 20.72 | 4.33 | KM Plot |
| UCEC | rs12292586 | chr11:62156312 | C/T | 0 | 171 | 22.63 | 21.1 | 4.33 | KM Plot |
| UCEC | rs12304739 | chr12:120996382 | T/A | 1.21E-8 | 167 | 22.57 | 21.6 | 4.5 | KM Plot |
| UCEC | rs12322258 | chr12:32807972 | G/A | 7.83E-5 | 171 | 21.5 | 23.82 | 24.87 | KM Plot |
| UCEC | rs12338630 | chr9:838367 | G/T | 8.2E-9 | 172 | 22.6 | 19.1 | 4.5 | KM Plot |
| UCEC | rs12340997 | chr9:840501 | C/T | 6.0E-9 | 174 | 4.5 | 20.07 | 22.63 | KM Plot |
| UCEC | rs12369346 | chr12:94301668 | G/A | 2.64E-7 | 174 | 22.57 | 29.02 | 5.45 | KM Plot |
| UCEC | rs12370964 | chr12:94300860 | T/C | 2.64E-7 | 174 | 22.57 | 29.02 | 5.45 | KM Plot |
| UCEC | rs12371409 | chr12:94293757 | A/G | 3.81E-7 | 172 | 22.6 | 29.02 | 5.45 | KM Plot |
| UCEC | rs12386576 | chr7:64172841 | T/A | 0 | 173 | 22.57 | 22.9 | 2.4 | KM Plot |
| UCEC | rs12386590 | chr7:64174283 | A/G | 0 | 174 | 22.57 | 21.98 | 2.4 | KM Plot |
| UCEC | rs12386643 | chr7:64174483 | G/C | 0 | 174 | 22.57 | 21.98 | 2.4 | KM Plot |
| UCEC | rs1240405 | chr10:88765225 | G/A | 6.14E-5 | 166 | 25.87 | 23.77 | 21.1 | KM Plot |